Co-expression analysis

Gene ID	1620757_at
Gene name	hypothetical protein LOC100260825
Homology with Arabidopsis	Similar to At1g51600: TIFY2A (HF=4e-3)
Module size	9 genes
NF	0.51
%ile	76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	84.7	0.97	1620757_at	CF372931	hypothetical protein LOC100260825	-	4e-3	At1g51600	TIFY2A	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.98	1616912_at	CF212478	hypothetical protein LOC100246170	-	6e-6	At3g55600	-	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1611308_at	CF202925.1	hypothetical protein LOC100248182	-	6e-4	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1620509_at	CF213694	hypothetical protein LOC100248585	-	2e-21	At4g39220	ATRER1A	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1613718_s_at	CF202933.1	hypothetical protein LOC100241422	-	7e+0	At5g11120	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.98	1617652_s_at	CF517834	hypothetical protein LOC100249964	-	3e-2	At3g63310	glutamate binding	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1616425_at	CF208709	hypothetical protein LOC100260616	-	5e-7	At2g32730	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.98	1612915_at	CF212348	hypothetical protein LOC100247677	-	8e-115	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1614948_at	CF518835	hypothetical protein LOC100265775	-	6e-61	At4g35360	pantothenate kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.4	91.3	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
1.9	87.2	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.9	87.2	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage