Co-expression analysis

Gene ID	1620741_at
Gene name	hypothetical protein LOC100243299
Homology with Arabidopsis	Similar to At5g58270: STA1 (STARIK 1) (HF=2e-2)
Module size	6 genes
NF	0.60
%ile	87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.97	1620741_at	CB972037	hypothetical protein LOC100243299	-	2e-2	At5g58270	STA1 (STARIK 1)	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.97	1613227_at	CB912270	hypothetical protein LOC100247606	-	3e+0	At5g62575	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.97	1609314_at	CF212696	hypothetical protein LOC100266108	-	4e+0	At3g04970	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1622397_at	CF515693	-	-	7e-2	At2g39970	peroxisomal membrane protein (PMP36)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.97	1618873_at	CB980637	hypothetical protein LOC100264953	-	1e+0	At3g05685	-	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	1617652_s_at	CF517834	hypothetical protein LOC100249964	-	3e-2	At3g63310	glutamate binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	98.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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