Co-expression analysis

Gene ID	1620728_at
Gene name	hypothetical protein LOC100245878
Homology with Arabidopsis	Similar to At4g14104: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.68
%ile	93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.98	1620728_at	CA818747	hypothetical protein LOC100245878	-	2e+0	At4g14104	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.97	1610883_at	CD797323	-	-	2e-1	At5g33300	chromosome-associated kinesin-related	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.97	1618845_at	BQ794823	hypothetical protein LOC100248664	-	1e+0	At5g40750	-	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1621091_at	CD799293	-	-	4e-28	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.97	1614925_at	CF607034	hypothetical protein LOC100259973	-	3e-18	At3g16480	MPPalpha (mitochondrial processing peptidase alpha subunit)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1607676_at	CB983117	hypothetical protein LOC100262709	-	4e-6	At5g10020	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.2	89.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.0	88.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
1.9	87.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.9	87.2	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44
1.8	86.0	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.8	86.0	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.8	86.0	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.8	86.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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