Co-expression analysis

Gene ID	1620709_at
Gene name
Homology with Arabidopsis	Similar to At5g12370: SEC10 (EXOCYST COMPLEX COMPONENT SEC10) (HF=1e-65)
Module size	6 genes
NF	0.13
%ile	21.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.94	1620709_at	CB918852	-	-	1e-65	At5g12370	SEC10 (EXOCYST COMPLEX COMPONENT SEC10)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1609452_at	BQ794280	hypothetical protein LOC100249768	-	3e-1	At4g31460	ribosomal protein L28 family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.96	1609388_at	CF568898	-	-	2e-2	At1g32400	TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.98	1619013_at	CF514808	hypothetical protein LOC100242671	-	3e-32	At1g03260	-	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.98	1621155_at	BQ794745	hypothetical protein LOC100248478	-	8e-34	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.98	1618348_at	CF373264	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	98.3	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
3.8	96.4	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
3.4	95.5	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
3.0	94.2	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
3.0	94.2	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.9	93.8	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.6	92.5	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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