Co-expression analysis

Gene ID	1620700_at
Gene name	hypothetical protein LOC100261522
Homology with Arabidopsis	Similar to At1g30230: elongation factor 1-beta / EF-1-beta (HF=4e-20)
Module size	7 genes
NF	0.69
%ile	93.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.99	1620700_at	BQ799947	hypothetical protein LOC100261522	-	4e-20	At1g30230	elongation factor 1-beta / EF-1-beta	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.99	1617878_at	CF510921	hypothetical protein LOC100258943	-	3e-85	At2g47110	UBQ6	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.99	1617593_at	CF215049	hypothetical protein LOC100253716	-	7e-86	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1610734_s_at	BQ798102	hypothetical protein LOC100249556	-	3e-5	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.99	1618317_at	CB972677	hypothetical protein LOC100243000	-	3e-45	At2g05220	40S ribosomal protein S17 (RPS17B)	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.99	1618719_at	CF414912	hypothetical protein LOC100258124	-	1e-71	At3g46040	RPS15AD (ribosomal protein S15A D)	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.99	1608604_at	BQ796866	hypothetical protein LOC100260136	-	7e-24	At3g05560	60S ribosomal protein L22-2 (RPL22B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	97.5	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.3	97.2	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.5	91.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
1.9	87.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.9	87.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage