Co-expression analysis

Gene ID	1620693_at
Gene name
Homology with Arabidopsis	Similar to At2g22730: transporter-related (HF=1e-12)
Module size	7 genes
NF	0.71
%ile	95.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	0.99	1620693_at	CF513433	-	-	1e-12	At2g22730	transporter-related	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	1622765_at	CF405914	-	-	4e+0	At3g59450	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.75	91.3	0.99	1617406_s_at	CF415339	hypothetical protein LOC100266010	-	2e-8	At3g07220	transcriptional activator, putative	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1616867_at	CF405655	hypothetical protein LOC100254223	-	2e-17	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.99	1617655_at	CB348593	hypothetical protein LOC100262391	-	5e-10	At3g16620	ATTOC120	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1608653_at	CB975644	hypothetical protein LOC100263217	-	5e+0	At4g15020	DNA binding / protein dimerization	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1608813_s_at	BQ795140	hypothetical protein LOC100255523	-	5e-84	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.7	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
3.7	96.2	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
2.4	91.3	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
2.4	91.3	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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