Co-expression analysis

Gene ID	1620677_at
Gene name	hypothetical protein LOC100257709
Homology with Arabidopsis	Similar to At4g20440: smB (small nuclear ribonucleoprotein associated protein B) (HF=1e+0)
Module size	6 genes
NF	0.39
%ile	58.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	64.1	0.98	1620677_at	BQ797428	hypothetical protein LOC100257709	-	1e+0	At4g20440	smB (small nuclear ribonucleoprotein associated protein B)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1615788_at	CF511058	hypothetical protein LOC100250348	-	2e+0	At5g47170	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1607756_s_at	CF519234	hypothetical protein LOC100241574	-	3e-40	At3g08510	ATPLC2 (PHOSPHOLIPASE C 2)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1612757_at	CD801743	hypothetical protein LOC100241266	-	1e+0	At2g32560	F-box family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1619595_at	CF207822	hypothetical protein LOC100256839	-	4e-39	At4g04040	MEE51 (maternal effect embryo arrest 51)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1611331_at	CF201541.1	hypothetical protein LOC100243930	-	7e-18	At5g19980	integral membrane family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	99.4	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436366	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM147683	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	12
2.8	93.4	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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