Co-expression analysis

Gene ID	1620672_at
Gene name	hypothetical protein LOC100254089
Homology with Arabidopsis	Similar to At3g54350: emb1967 (embryo defective 1967) (HF=4e-11)
Module size	10 genes
NF	0.63
%ile	89.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.97	1620672_at	CF207554	hypothetical protein LOC100254089	-	4e-11	At3g54350	emb1967 (embryo defective 1967)	O.I.	H.G.	S.X.	Please select
0.86	95.1	0.98	1606978_s_at	CF207835	hypothetical protein LOC100242245	-	5e-1	At1g16680	DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1607831_at	BQ799075	hypothetical protein LOC100249242	-	8e-7	At3g03950	protein binding	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.98	1613050_at	CB971087	hypothetical protein LOC100248215	-	5e-4	At1g20470	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.98	1610048_at	CF403624	hypothetical protein LOC100258703	-	3e-4	At5g37310	-	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.98	1608808_at	CB348362	hypothetical protein LOC100252460	-	1e+0	Atmg01020	-	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.98	1616515_at	CF211788	hypothetical protein LOC100259212	-	5e+0	At5g44900	transmembrane receptor	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1615779_at	CF415379	hypothetical protein LOC100263332	-	2e+1	At5g16567	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1612058_at	CF513284	hypothetical protein LOC100259015	-	3e-15	At2g33845	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1609772_at	CF511919	hypothetical protein LOC100246247	-	3e-1	At3g56880	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.8	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.8	97.8	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.8	96.4	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.7	96.2	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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