Co-expression analysis

Gene ID	1620639_at
Gene name	hypothetical protein LOC100247658
Homology with Arabidopsis	Similar to At1g10455: unknown protein (HF=3e-1)
Module size	6 genes
NF	0.51
%ile	76.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.96	1620639_at	CA817351	hypothetical protein LOC100247658	-	3e-1	At1g10455	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1620634_at	CD720882	hypothetical protein LOC100247245	-	7e-18	At1g44446	CH1 (CHLORINA 1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.96	1616686_at	CF372807	-	-	1e+0	At1g44000	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1618249_at	CF510539	hypothetical protein LOC100260378	-	2e-39	At2g24270	ALDH11A3	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.95	1616349_a_at	CB914439	GDP-mannose-3',5'-epimerase	-	0	At5g28840	GME (GDP-D-MANNOSE 3',5'-EPIMERASE)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.97	1613826_at	CA817987	hypothetical protein LOC100241562	-	4e-30	At1g55480	binding / protein binding	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.8	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.7	98.5	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.2	94.9	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.3	90.7	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM147688	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	17
2.2	89.9	GSM147683	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	12

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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