Co-expression analysis

Gene ID	1620621_at
Gene name	similar to nam-like protein
Homology with Arabidopsis	Similar to At1g01720: ATAF1 (HF=4e-33)
Module size	6 genes
NF	0.21
%ile	30.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	0.95	1620621_at	CF519062	similar to nam-like protein	-	4e-33	At1g01720	ATAF1	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.95	1619178_at	CB349106	hypothetical protein LOC100257853 /// hypothetical protein LOC100252432	-	3e-8	At1g68300	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.95	1613026_at	CF215169	-	-	2e-20	At1g65000	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.95	1607042_at	CF209844	hypothetical protein LOC100262420	-	2e-12	At4g09830	-	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.95	1612913_at	BQ792733	similar to Citrate synthase, glyoxysomal	-	1e-46	At3g58750	CSY2 (citrate synthase 2)	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.95	1618050_s_at	BQ792637	hypothetical protein LOC100259485	-	1e-2	At3g01170	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.1	94.6	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
3.1	94.6	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
3.0	94.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.7	93.0	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.6	92.5	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.5	91.9	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.3	90.7	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
2.3	90.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage