Co-expression analysis

Gene ID	1620603_at
Gene name	hypothetical protein LOC100256346
Homology with Arabidopsis	Similar to At3g55760: unknown protein (HF=2e-43)
Module size	6 genes
NF	0.41
%ile	60.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.96	1620603_at	CF515961	hypothetical protein LOC100256346	-	2e-43	At3g55760	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1609668_at	CA816744	hypothetical protein LOC100256598	-	1e+0	At3g12430	3'-5' exonuclease/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1622787_at	CF607318	hypothetical protein LOC100244878	-	4e-19	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1621867_at	CF516530	-	-	5e-2	At5g66000	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.96	1616050_at	CF373308	hypothetical protein LOC100244878	-	9e+0	At5g06280	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.97	1618094_at	CB340258	hypothetical protein LOC100261032	-	3e-27	At4g33140	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.6	99.6	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.1	94.6	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.8	86.0	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.8	86.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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