CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1620542_at

Gene name hypothetical protein LOC100255788
Homology with Arabidopsis Similar to At2g16800: high-affinity nickel-transport family protein (HF=9e-31)

Module size 6 genes

NF 0.46

%ile 69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 75.2 0.95 1620542_at CB344230 hypothetical protein LOC100255788 - 9e-31 At2g16800 high-affinity nickel-transport family protein O.I. H.G. S.X.
0.67 87.9 0.95 1607286_at CF207311 hypothetical protein LOC100267511 - 3e-69 At3g12150 unknown protein O.I. H.G. S.X.
0.47 67.7 0.95 1616579_at CF514965 hypothetical protein LOC100260111 - 6e-2 At3g12360 ITN1 (INCREASED TOLERANCE TO NACL) O.I. H.G. S.X.
0.46 66.5 0.95 1619252_at CF206010.1 hypothetical protein LOC100242409 - 1e-28 At3g01850 ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative O.I. H.G. S.X.
0.29 37.7 0.95 1610068_at CD711769 hypothetical protein LOC100252154 - 2e-19 At2g36670 aspartyl protease family protein O.I. H.G. S.X.
0.27 34.0 0.95 1615832_at BQ792735 hypothetical protein LOC100242360 - 1e-10 At2g24860 chaperone protein dnaJ-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.7 98.5 GSM287877 Green hard berry B12 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
4.5 97.5 GSM287890 Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.7 96.2 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.5 95.7 GSM287886 Green soft berry C22 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.2 94.9 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.0 94.2 GSM287879 Green hard berry C19 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.0 94.2 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.7 93.0 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.7 93.0 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58

Inter-species module comparison

A co-expression module including the rice gene, Os03g0156700, orthologous to the query gene, 1620542_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.76 92.2 Os03g0156700 At2g16800 - High-affinity nickel-transporter family protein 3e-6 At4g35080 high-affinity nickel-transport family protein O.I. H.G. S.X.
0.38 46.9 Os07g0250300 At2g16800 - Conserved hypothetical protein 2e+0 At5g44210 ERF9 (ERF DOMAIN PROTEIN 9) O.I. H.G. S.X.
0.29 31.1 Os03g0271600 At2g16800 - Zn-finger, RING domain containing protein 7e-1 At4g11655 transmembrane protein, putative O.I. H.G. S.X.
0.28 31.1 Os01g0268800 At2g16800 - Ubiquitin-associated domain containing protein 2e-4 At3g56740 ubiquitin-associated (UBA)/TS-N domain-containing protein O.I. H.G. S.X.
0.27 27.5 Os03g0419100 At2g16800 - Conserved hypothetical protein 2e-1 At1g13740 AFP2 (ABI FIVE BINDING PROTEIN 2) O.I. H.G. S.X.
0.25 24.1 Os01g0315800 At2g16800 - NAD-dependent epimerase/dehydratase family protein 3e-56 At2g47650 UXS4 (UDP-XYLOSE SYNTHASE 4) O.I. H.G. S.X.
0.25 24.1 Os11g0113300 At2g16800 - Conserved hypothetical protein 5e-1 At4g20470 unknown protein O.I. H.G. S.X.
0.25 24.1 Os02g0833300 At2g16800 - Tumour susceptibility gene 101 family protein 2e-1 At4g30980 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.25 24.1 Os06g0715400 At2g16800 - Conserved hypothetical protein 1e-2 At5g66250 kinectin-related O.I. H.G. S.X.
0.20 16.5 Os06g0301100 At2g16800 - Hypothetical protein 1e-1 At2g45110 ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4) O.I. H.G. S.X.
0.16 11.3 Os05g0419600 At2g16800 - Conserved hypothetical protein 3e-3 At1g09645 unknown protein O.I. H.G. S.X.
0.14 9.3 Os04g0398600 At2g16800 - - 3e-32 At5g61840 GUT1 O.I. H.G. S.X.
0.11 6.5 Os05g0511400 At2g16800 - Protein kinase GhCLK1 (Fragment) 3e-41 At4g14350 protein kinase family protein O.I. H.G. S.X.
0.09 4.9 Os07g0459400 At2g16800 - Regulator of chromosomecondensation/beta-lactamase-inhibitor protein II domaincontaining protein 3e-1 At3g15430 regulator of chromosome condensation (RCC1) family protein O.I. H.G. S.X.
0.08 4.2 Os01g0232400 At2g16800 - VHS domain containing protein 2e-2 At3g16270 - O.I. H.G. S.X.
0.07 3.7 Os03g0136800 At2g16800 - Heat shock protein DnaJ family protein 2e+0 At5g27120 SAR DNA-binding protein, putative O.I. H.G. S.X.
0.05 2.5 Os09g0281700 At2g16800 - Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1) 1e-17 At5g47960 ATRABA4C O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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