Co-expression analysis

Gene ID	1620542_at
Gene name	hypothetical protein LOC100255788
Homology with Arabidopsis	Similar to At2g16800: high-affinity nickel-transport family protein (HF=9e-31)
Module size	6 genes
NF	0.46
%ile	69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.95	1620542_at	CB344230	hypothetical protein LOC100255788	-	9e-31	At2g16800	high-affinity nickel-transport family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.95	1607286_at	CF207311	hypothetical protein LOC100267511	-	3e-69	At3g12150	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.95	1616579_at	CF514965	hypothetical protein LOC100260111	-	6e-2	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1619252_at	CF206010.1	hypothetical protein LOC100242409	-	1e-28	At3g01850	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.95	1610068_at	CD711769	hypothetical protein LOC100252154	-	2e-19	At2g36670	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.95	1615832_at	BQ792735	hypothetical protein LOC100242360	-	1e-10	At2g24860	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	98.5	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.5	97.5	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.7	96.2	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.5	95.7	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58

Inter-species module comparison

A co-expression module including the barley gene, Contig10956_at, orthologous to the query gene, 1620542_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	Contig10956_at	At2g16800	-	-	4e-1	At2g16800	high-affinity nickel-transport family protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	Contig5296_at	At2g16800	-	-	4e-25	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.67	84.7	HX01C23w_s_at	At2g16800	-	-	5e+0	At5g17165	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig13550_at	At2g16800	-	-	7e-7	At5g42660	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig1788_at	At2g16800	-	-	8e-27	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig14241_at	At2g16800	-	-	2e+0	At3g16250	NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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