CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1620518_at

Gene name
Homology with Arabidopsis Similar to At3g04720: PR4 (PATHOGENESIS-RELATED 4) (HF=9e-14)

Module size 17 genes

NF 0.72

%ile 95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.78 92.6 0.84 1620518_at CF201341.1 - - 9e-14 At3g04720 PR4 (PATHOGENESIS-RELATED 4) O.I. H.G. S.X.
0.81 93.7 0.89 1618835_s_at BQ797163 hypothetical protein LOC100255405 - 2e-11 At3g04720 PR4 (PATHOGENESIS-RELATED 4) O.I. H.G. S.X.
0.81 93.7 0.91 1617171_s_at AF000371.1 UDP glucose:flavonoid 3-o-glucosyltransferase - 1e-2 At5g17030 UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3) O.I. H.G. S.X.
0.78 92.6 0.85 1614658_a_at CF518071 glutathione S-transferase - 6e-2 At5g50830 unknown protein O.I. H.G. S.X.
0.78 92.6 0.86 1619917_s_at CF518071 glutathione S-transferase - 6e-2 At5g50830 unknown protein O.I. H.G. S.X.
0.78 92.6 0.91 1617756_at CB981493 hypothetical protein LOC100253194 - 2e+1 At5g57560 TCH4 (Touch 4) O.I. H.G. S.X.
0.77 92.3 0.90 1620959_s_at CB915151 myb-relared transcription factor VvMYBA2 - 4e+0 At5g19855 unknown protein O.I. H.G. S.X.
0.75 91.3 0.92 1618296_s_at CD711959 - - 1e+0 At2g01275 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.73 90.8 0.92 1616545_at CF204572.1 - - 2e+1 At5g51410 LUC7 N_terminus domain-containing protein O.I. H.G. S.X.
0.68 88.0 0.87 1616045_a_at AJ237983.1 proline-rich cell wall protein-like - 2e+0 At3g47180 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.67 87.9 0.89 1617409_at CF512556 similar to isoflavone reductase-like protein 2 - 4e-1 At1g32585 VQ motif-containing protein-related O.I. H.G. S.X.
0.67 87.9 0.89 1616898_at BQ796057 hypothetical protein LOC100250567 - 4e-1 At5g46013 unknown protein O.I. H.G. S.X.
0.64 84.7 0.91 1608122_at CB982493 hypothetical protein LOC100241637 - 4e-1 At4g36100 - O.I. H.G. S.X.
0.57 79.8 0.95 1615798_at AB073013.1 - - 1e-5 At1g66370 MYB113 (myb domain protein 113) O.I. H.G. S.X.
0.56 79.4 0.93 1611457_at CD711959 - - 1e+0 At2g01275 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.55 77.3 0.93 1616413_at AF003007.1 VVTL1 - 4e-5 At4g11650 ATOSM34 (osmotin 34) O.I. H.G. S.X.
0.49 69.3 0.90 1613811_a_at CB920849 VVTL1 - 5e-13 At1g07720 KCS3 (3-KETOACYL-COA SYNTHASE 3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.9 93.8 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
2.8 93.4 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.8 93.4 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
2.2 89.9 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
2.1 89.1 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.1 89.1 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
1.9 87.2 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
1.9 87.2 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9 87.2 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
1.9 87.2 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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