Co-expression analysis

Gene ID 1620502_at
Gene name hypothetical protein LOC100256223
Homology with ArabidopsisSimilar to At1g56140: leucine-rich repeat family protein / protein kinase family protein (HF=1e-14)
Module size 6 genes
NF 0.20
%ile 28.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6183.20.911620502_atCF208333hypothetical protein LOC100256223-1e-14At1g56140leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.4464.10.961618942_atCA817511--2e-6At3g54700carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporterO.I.H.G.S.X.
0.3141.30.931612617_s_atCB343433hypothetical protein LOC100257516-1e+0At1g08985DNA bindingO.I.H.G.S.X.
0.1920.90.931616162_s_atCF517760--1e+0At5g19257unknown proteinO.I.H.G.S.X.
0.1010.30.931614399_atCB001667hypothetical protein LOC100252418-9e-2At3g59730receptor lectin kinase, putativeO.I.H.G.S.X.
0.099.40.941618508_atCF208698hypothetical protein LOC100254705 /// hypothetical protein LOC100260176 /// hypothetical protein LOC100263586 /// hypothetical protein LOC100266529-4e+0At2g18876unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5072.70.931616030_x_atCF203685.1--1e+0At5g0261060S ribosomal protein L35 (RPL35D)O.I.H.G.S.X.
0.5072.70.941620043_atAY427149.1hypothetical protein LOC100248492-1e-3At2g31880leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.4868.80.901614830_atCD800311hypothetical protein LOC100253816-6e-2At4g32870unknown proteinO.I.H.G.S.X.
0.3548.50.921608624_atCF207346hypothetical protein LOC100250126-1e+0At3g28170unknown proteinO.I.H.G.S.X.
0.3345.70.911617909_atCD005218hypothetical LOC100257822-1e-3At2g03030Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.3345.70.941616384_atCD718326--1e+0At4g11100unknown proteinO.I.H.G.S.X.
0.3243.10.901608956_atCB002757--2e+0At4g15802-O.I.H.G.S.X.
0.3141.30.931618860_atCD007285hypothetical LOC100241485 /// hypothetical protein LOC100252358 /// hypothetical protein LOC100257255 /// hypothetical protein LOC100260526-2e+0At3g61360pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2937.70.911608997_atCF209446--9e-1At3g05746unknown proteinO.I.H.G.S.X.
0.2734.00.921609982_atCF200748.1--5e+0At3g49470NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)O.I.H.G.S.X.
0.2734.00.871608772_atCF517227phosphate transporter-like-4e+0At4g14315unknown proteinO.I.H.G.S.X.
0.2734.00.921614797_s_atCD008337hypothetical protein LOC100250890-2e+0At5g25270-O.I.H.G.S.X.
0.2734.00.951610660_atCB008720hypothetical LOC100263492-1e+0At2g20700unknown proteinO.I.H.G.S.X.
0.2632.00.851606794_atCB972023hypothetical protein LOC100259841 /// hypothetical protein LOC100254732 /// hypothetical protein LOC100244461 /// hypothetical protein LOC100249610-7e+0At4g11650ATOSM34 (osmotin 34)O.I.H.G.S.X.
0.2530.50.931619683_atCF373178hypothetical protein LOC100263488-6e-2At5g44894unknown proteinO.I.H.G.S.X.
0.2530.50.931621218_atCA817306--1e+0At5g15440EDL1 (EID1-like 1)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.696.0GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.094.2GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436423V. riparia (VR, PI588259) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM147725Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation54Link to GEO
1.987.2GSM436397V. riparia (VR, PI588259) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436349Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
1.886.0GSM147741Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation70Link to GEO
1.784.7GSM147685Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation14Link to GEO
1.784.7GSM147723Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation52Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage