Co-expression analysis

Gene ID 1620502_at
Gene name hypothetical protein LOC100256223
Homology with ArabidopsisSimilar to At1g56140: leucine-rich repeat family protein / protein kinase family protein (HF=1e-14)
Module size 6 genes
NF 0.20
%ile 28.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6183.20.911620502_atCF208333hypothetical protein LOC100256223-1e-14At1g56140leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.4464.10.961618942_atCA817511--2e-6At3g54700carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporterO.I.H.G.S.X.
0.3141.30.931612617_s_atCB343433hypothetical protein LOC100257516-1e+0At1g08985DNA bindingO.I.H.G.S.X.
0.1920.90.931616162_s_atCF517760--1e+0At5g19257unknown proteinO.I.H.G.S.X.
0.1010.30.931614399_atCB001667hypothetical protein LOC100252418-9e-2At3g59730receptor lectin kinase, putativeO.I.H.G.S.X.
0.099.40.941618508_atCF208698hypothetical protein LOC100254705 /// hypothetical protein LOC100260176 /// hypothetical protein LOC100263586 /// hypothetical protein LOC100266529-4e+0At2g18876unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.696.0GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.094.2GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436423V. riparia (VR, PI588259) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM147725Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation54Link to GEO
1.987.2GSM436397V. riparia (VR, PI588259) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436349Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
1.886.0GSM147741Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation70Link to GEO
1.784.7GSM147685Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation14Link to GEO
1.784.7GSM147723Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation52Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.104738.1.S1_at, orthologous to the query gene, 1620502_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9799.6TaAffx.104738.1.S1_atAt1g56140--1e-15At1g53430leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.4767.9TaAffx.30997.1.S1_s_atAt1g56140--2e+0At5g63090LOB (LATERAL ORGAN BOUNDARIES)O.I.H.G.S.X.
0.4464.5TaAffx.8070.1.S1_atAt1g56140--3e+0At2g35075unknown proteinO.I.H.G.S.X.
0.4260.9TaAffx.57764.1.S1_atAt1g56140--4e+0At1g27950LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1)O.I.H.G.S.X.
0.4260.9TaAffx.86634.1.S1_atAt1g56140--4e+0At1g52470hydrolaseO.I.H.G.S.X.
0.4159.6TaAffx.62788.1.S1_atAt1g56140--4e+0At1g71780unknown proteinO.I.H.G.S.X.
0.3956.1Ta.640.3.S1_atAt1g56140--1e+0At4g09270unknown proteinO.I.H.G.S.X.
0.3956.1TaAffx.50694.1.S1_atAt1g56140--2e+0At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.3854.7TaAffx.107179.1.S1_atAt1g56140--8e-1At3g60760unknown proteinO.I.H.G.S.X.
0.3753.0TaAffx.112608.1.S1_atAt1g56140--3e-4At1g22710SUC2 (SUCROSE-PROTON SYMPORTER 2)O.I.H.G.S.X.
0.3651.9TaAffx.39326.1.S1_atAt1g56140--5e+0At5g44170-O.I.H.G.S.X.
0.3651.9TaAffx.58571.1.S1_atAt1g56140--2e+1At1g80050APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)O.I.H.G.S.X.
0.3651.9TaAffx.87002.1.S1_atAt1g56140--3e+0At4g35070-O.I.H.G.S.X.
0.3651.9TaAffx.106663.1.S1_atAt1g56140--1e+0At5g23440FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)O.I.H.G.S.X.
0.3549.8TaAffx.7846.1.S1_atAt1g56140--2e+1At5g15670F-box family proteinO.I.H.G.S.X.
0.3346.9TaAffx.118620.1.S1_atAt1g56140--1e+0At2g31560unknown proteinO.I.H.G.S.X.
0.3346.9Ta.6759.2.S1_atAt1g56140--2e+0At5g63310NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)O.I.H.G.S.X.
0.3346.9Ta.16745.1.S1_s_atAt1g56140Acyl transferase 5-like-5e+0At5g38180protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3244.4TaAffx.80253.1.S1_atAt1g56140--3e-1At5g05140transcription elongation factor-relatedO.I.H.G.S.X.
0.3244.4Ta.6762.3.S1_atAt1g56140--1e+0At5g61490-O.I.H.G.S.X.
0.3244.4Ta.18019.2.S1_atAt1g56140--1e+0At1g32700zinc-binding family proteinO.I.H.G.S.X.
0.3142.7TaAffx.73323.1.S1_atAt1g56140--3e+0At5g45870Bet v I allergen family proteinO.I.H.G.S.X.
0.3040.9Ta.7320.2.S1_atAt1g56140--1e+0At5g24655LSU4 (RESPONSE TO LOW SULFUR 4)O.I.H.G.S.X.
0.3040.9TaAffx.6157.1.S1_atAt1g56140--4e+0At2g42930glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.2939.2TaAffx.107754.1.S1_atAt1g56140--1e+0At2g21780unknown proteinO.I.H.G.S.X.
0.2735.6TaAffx.115939.2.S1_atAt1g56140--7e-2At1g30800-O.I.H.G.S.X.
0.2735.6TaAffx.105451.1.S1_atAt1g56140--1e+0At3g06730thioredoxin family proteinO.I.H.G.S.X.
0.2735.6TaAffx.85941.1.S1_atAt1g56140--2e+1At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2735.6TaAffx.12517.1.S1_atAt1g56140--1e+0At5g34581hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2633.6TaAffx.79437.1.S1_atAt1g56140--3e+0At1g02680TAF13 (TBP-ASSOCIATED FACTOR 13)O.I.H.G.S.X.
0.2633.6TaAffx.119035.1.A1_atAt1g56140--1e+0At2g13720ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)O.I.H.G.S.X.
0.2430.3TaAffx.78517.1.S1_atAt1g56140--4e+0At2g25720unknown proteinO.I.H.G.S.X.
0.2430.3TaAffx.52323.1.S1_atAt1g56140--4e+0At5g27238-O.I.H.G.S.X.
0.2329.0TaAffx.24685.1.S1_atAt1g56140--3e+0At2g36080DNA-binding protein, putativeO.I.H.G.S.X.
0.2125.5TaAffx.25008.1.S1_atAt1g56140--1e+1At5g24370invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.2125.5TaAffx.28084.1.S1_atAt1g56140--2e+1At5g10504unknown proteinO.I.H.G.S.X.
0.2125.5TaAffx.80426.1.S1_atAt1g56140--4e-1At2g12935unknown proteinO.I.H.G.S.X.
0.2024.0Ta.1951.2.A1_atAt1g56140--2e+1At5g55000FIP2O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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