Co-expression analysis

Gene ID	1620502_at
Gene name	hypothetical protein LOC100256223
Homology with Arabidopsis	Similar to At1g56140: leucine-rich repeat family protein / protein kinase family protein (HF=1e-14)
Module size	6 genes
NF	0.20
%ile	28.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	0.91	1620502_at	CF208333	hypothetical protein LOC100256223	-	1e-14	At1g56140	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1618942_at	CA817511	-	-	2e-6	At3g54700	carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugar:hydrogen symporter	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.93	1612617_s_at	CB343433	hypothetical protein LOC100257516	-	1e+0	At1g08985	DNA binding	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.93	1616162_s_at	CF517760	-	-	1e+0	At5g19257	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.93	1614399_at	CB001667	hypothetical protein LOC100252418	-	9e-2	At3g59730	receptor lectin kinase, putative	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.94	1618508_at	CF208698	hypothetical protein LOC100254705 /// hypothetical protein LOC100260176 /// hypothetical protein LOC100263586 /// hypothetical protein LOC100266529	-	4e+0	At2g18876	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.0	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
1.9	87.2	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
1.8	86.0	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.7	84.7	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
1.7	84.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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