Co-expression analysis

Gene ID	1620463_at
Gene name	hypothetical protein LOC100265246
Homology with Arabidopsis	Similar to At2g27970: CKS2 (CDK-subunit 2) (HF=1e+0)
Module size	20 genes
NF	0.38
%ile	55.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	88.0	0.98	1620463_at	CD013332	hypothetical protein LOC100265246	-	1e+0	At2g27970	CKS2 (CDK-subunit 2)	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.98	1618103_at	CF208972	-	-	4e+0	At2g17070	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.99	1620191_at	CB968759	hypothetical protein LOC100245656	-	1e+0	At3g08636	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.98	1607444_at	BQ798524	hypothetical protein LOC100247182	-	1e+0	At4g20095	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1613762_at	CF404411	hypothetical protein LOC100256306	-	5e-3	At2g04880	ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1618348_at	CF373264	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.99	1611870_at	CF414975	hypothetical protein LOC100247177	-	8e-152	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.98	1614602_at	CB004149	hypothetical protein LOC100244335	-	1e-32	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.99	1611523_at	CD801109	hypothetical protein LOC100267138	-	6e-16	At3g21865	PEX22 (peroxin 22)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.98	1613769_at	CB970019	hypothetical protein LOC100265267	-	4e-48	At1g51690	ATB ALPHA	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.98	1612922_at	BQ795022	similar to FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription factor	-	1e+0	At1g02510	TPK4	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1619211_s_at	CD798358	hypothetical protein LOC100256723	-	6e-47	At1g17730	VPS46.1 (VACUOLAR PROTEIN SORTING 46.1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1616070_at	BQ798090	hypothetical protein LOC100242617	-	3e-111	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1606947_at	CB913871	hypothetical protein LOC100252114	-	3e-32	At2g16860	GCIP-interacting family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1617244_s_at	CB341989	hypothetical protein LOC100262315	-	1e-23	At4g22150	PUX3	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.99	1620790_at	CF515444	hypothetical protein LOC100249710	-	5e-4	At5g43960	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.98	1609424_at	CD798745	hypothetical protein LOC100263956	-	7e-30	At3g13670	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.98	1617248_at	CB979169	hypothetical protein LOC100265801	-	4e-19	At3g58560	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1607924_at	CB971581	hypothetical protein LOC100261557	-	3e-11	At4g16580	catalytic	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1613731_at	CF513972	hypothetical protein LOC100248748	-	2e-5	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.8	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.6	92.5	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.6	92.5	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.6	92.5	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.5	91.9	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.4	91.3	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.3	90.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.2	89.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.2	89.9	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.1	89.1	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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