Co-expression analysis

Gene ID	1620454_s_at
Gene name	lipid transfer protein
Homology with Arabidopsis	Similar to At5g01870: lipid transfer protein, putative (HF=2e+0)
Module size	8 genes
NF	0.50
%ile	75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.98	1620454_s_at	AF467946.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.75	91.3	0.98	1609281_s_at	AF467945.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1608241_at	CD798818	hypothetical protein LOC100251333	-	1e-15	At5g06000	EIF3G2	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1606671_at	CA809598	hypothetical protein LOC100262399	-	3e-21	At4g31580	SRZ-22	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1614871_s_at	CF404051	hypothetical protein LOC100266189	-	7e-5	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.99	1610845_at	CF208629	hypothetical protein LOC100245365	-	2e+0	At1g68030	PHD finger protein-related	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1608869_s_at	CF514065	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.98	1615237_at	CB913715	hypothetical protein LOC100246592	-	3e-18	At2g37110	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	99.0	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.9	96.6	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.7	96.2	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.5	95.7	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.4	91.3	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage