CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1620426_at

Gene name similar to DNA-binding protein
Homology with Arabidopsis Similar to At1g13960: WRKY4 (HF=1e-20)

Module size 6 genes

NF 0.49

%ile 73.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.96 1620426_at CF515986 similar to DNA-binding protein - 1e-20 At1g13960 WRKY4 O.I. H.G. S.X.
0.80 93.6 0.96 1620491_at CD800015 hypothetical protein LOC100257942 - 2e+0 At5g56540 AGP14 (ARABINOGALACTAN PROTEIN 14) O.I. H.G. S.X.
0.50 72.7 0.96 1615365_at CB973771 hypothetical protein LOC100253158 - 2e-14 At1g54130 RSH3 (RELA/SPOT HOMOLOG 3) O.I. H.G. S.X.
0.40 57.7 0.96 1614977_at CB978594 - - 2e+1 At5g17480 APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1) O.I. H.G. S.X.
0.36 50.7 0.96 1617496_s_at BQ797047 hypothetical protein LOC100247953 - 7e-25 At3g12570 FYD O.I. H.G. S.X.
0.35 48.5 0.97 1617283_at CF372456 hypothetical LOC100245758 - 4e-20 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.9	0.96	1620426_at	CF515986	similar to DNA-binding protein	-	1e-20	At1g13960	WRKY4	O.I.	H.G.	S.X.
0.80	93.6	0.96	1620491_at	CD800015	hypothetical protein LOC100257942	-	2e+0	At5g56540	AGP14 (ARABINOGALACTAN PROTEIN 14)	O.I.	H.G.	S.X.
0.50	72.7	0.96	1615365_at	CB973771	hypothetical protein LOC100253158	-	2e-14	At1g54130	RSH3 (RELA/SPOT HOMOLOG 3)	O.I.	H.G.	S.X.
0.40	57.7	0.96	1614977_at	CB978594	-	-	2e+1	At5g17480	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	O.I.	H.G.	S.X.
0.36	50.7	0.96	1617496_s_at	BQ797047	hypothetical protein LOC100247953	-	7e-25	At3g12570	FYD	O.I.	H.G.	S.X.
0.35	48.5	0.97	1617283_at	CF372456	hypothetical LOC100245758	-	4e-20	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	92.3	0.96	1621033_at	CD797294	hypothetical protein LOC100252641	-	2e-1	At1g11750	CLPP6	O.I.	H.G.	S.X.
0.67	87.9	0.95	1613676_at	CB002629	hypothetical protein LOC100266011	-	4e+0	At3g19200	unknown protein	O.I.	H.G.	S.X.
0.56	79.4	0.95	1617882_at	CB346978	hypothetical protein LOC100265703	-	1e-19	At1g18680	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.
0.55	77.3	0.95	1615915_at	CF518741	hypothetical protein LOC100267889	-	4e+0	At2g24880	self-incompatibility protein-related	O.I.	H.G.	S.X.
0.50	72.7	0.96	1615664_at	CA809363	hypothetical protein LOC100264293	-	4e+0	At3g10116	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	0.96	1616579_at	CF514965	hypothetical protein LOC100260111	-	6e-2	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	O.I.	H.G.	S.X.
0.48	68.8	0.95	1608292_at	CA817093	hypothetical protein LOC100241035	-	7e-30	At5g57690	diacylglycerol kinase	O.I.	H.G.	S.X.
0.46	66.5	0.95	1606764_at	CB341817	hypothetical protein LOC100245034	-	1e-15	At5g62740	band 7 family protein	O.I.	H.G.	S.X.
0.46	66.5	0.92	1609253_at	CB974058	-	-	4e+0	At3g30160	unknown protein	O.I.	H.G.	S.X.
0.44	64.1	0.92	1612175_s_at	BQ792640	hypothetical protein LOC100250200	-	2e-12	At1g80920	J8	O.I.	H.G.	S.X.
0.44	64.1	0.93	1619201_at	CF404561	Myb-related TRIPTYCHON-like protein	-	4e-28	At5g53200	TRY (TRIPTYCHON)	O.I.	H.G.	S.X.
0.44	64.1	0.94	1622456_at	CF609276	hypothetical protein LOC100245907 /// hypothetical protein LOC100265993	-	2e-1	At5g65870	ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)	O.I.	H.G.	S.X.
0.42	60.1	0.95	1612860_at	CF210174	hypothetical protein LOC100261292	-	4e-54	At3g22950	ATARFC1 (ADP-ribosylation factor C1)	O.I.	H.G.	S.X.
0.42	60.1	0.94	1618314_at	CB976771	hypothetical protein LOC100251586	-	4e+0	At3g23715	SCRL13 (SCR-Like 13)	O.I.	H.G.	S.X.
0.40	57.7	0.92	1617093_at	CF519144	hypothetical protein LOC100241671	-	4e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.
0.40	57.7	0.93	1618215_s_at	CF604041	hypothetical protein LOC100242926	-	9e-11	At3g21360	electron carrier/ oxidoreductase	O.I.	H.G.	S.X.
0.40	57.7	0.93	1610784_at	CB968758	-	-	1e+0	At3g44350	anac061 (Arabidopsis NAC domain containing protein 61)	O.I.	H.G.	S.X.
0.40	57.7	0.94	1621026_at	CF519288	hypothetical protein LOC100242241	-	1e-22	At3g28480	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.
0.40	57.7	0.95	1615815_at	CF207323	similar to ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	-	5e-23	At3g49290	ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2)	O.I.	H.G.	S.X.
0.40	57.7	0.95	1617328_at	CF214435	hypothetical protein LOC100247950	-	8e-43	At4g36750	quinone reductase family protein	O.I.	H.G.	S.X.
0.40	57.7	0.96	1610068_at	CD711769	hypothetical protein LOC100252154	-	2e-19	At2g36670	aspartyl protease family protein	O.I.	H.G.	S.X.
0.40	57.7	0.97	1611878_at	CF207022.1	-	-	2e-2	At2g20613	unknown protein	O.I.	H.G.	S.X.
0.38	53.6	0.92	1607634_at	CF204724.1	-	-	2e-9	At5g65660	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.36	50.7	0.91	1612734_at	CD717076	-	-	6e-7	At5g51270	protein kinase family protein	O.I.	H.G.	S.X.
0.36	50.7	0.93	1615511_at	CF404471	hypothetical protein LOC100249393	-	1e+0	At5g25210	unknown protein	O.I.	H.G.	S.X.
0.35	48.5	0.92	1612440_at	CF205292.1	-	-	9e-8	At4g11410	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.34	46.8	0.95	1609392_s_at	CF210020	hypothetical protein LOC100242395	-	2e-47	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.
0.33	45.7	0.93	1616933_at	CB345010	hypothetical protein LOC100265903	-	1e-13	At1g02920	GSTF7	O.I.	H.G.	S.X.
0.33	45.7	0.94	1618804_at	CF605303	-	-	5e+0	At5g14370	-	O.I.	H.G.	S.X.
0.33	45.7	0.95	1608033_at	CF405913	-	-	4e+0	At5g10000	ATFD4 (ferredoxin 4)	O.I.	H.G.	S.X.
0.33	45.7	0.95	1619038_at	BQ800482	hypothetical protein LOC100259975	-	5e-12	At4g26510	ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase	O.I.	H.G.	S.X.
0.33	45.7	0.96	1618259_at	BM436271	hypothetical LOC100245758	-	3e-32	At5g65780	ATBCAT-5	O.I.	H.G.	S.X.
0.32	43.1	0.95	1610587_at	CB970512	hypothetical protein LOC100240780	-	2e+0	At4g30260	integral membrane Yip1 family protein	O.I.	H.G.	S.X.
0.32	43.1	0.94	1617736_a_at	CF209766	hypothetical protein LOC100240929	-	6e-1	At3g05500	rubber elongation factor (REF) family protein	O.I.	H.G.	S.X.
0.32	43.1	0.94	1614388_at	CF210132	hypothetical protein LOC100241529	-	2e-1	At2g21610	pectinesterase family protein	O.I.	H.G.	S.X.
0.31	41.3	0.95	1608192_at	CB982511	hypothetical protein LOC100259233	-	2e-19	At5g13180	ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83)	O.I.	H.G.	S.X.
0.31	41.3	0.95	1620542_at	CB344230	hypothetical protein LOC100255788	-	9e-31	At2g16800	high-affinity nickel-transport family protein	O.I.	H.G.	S.X.
0.30	39.4	0.92	1609986_at	CB349859	hypothetical protein LOC100261396	-	6e-2	At4g05130	equilibrative nucleoside transporter, putative (ENT4)	O.I.	H.G.	S.X.
0.29	37.7	0.93	1613545_at	CB981843	hypothetical protein LOC100241227	-	7e+0	Atmg01400	-	O.I.	H.G.	S.X.
0.29	37.7	0.95	1611288_at	CD800916	-	-	1e+0	At1g02330	-	O.I.	H.G.	S.X.
0.29	37.7	0.95	1617272_at	CF518232	zinc finger RING-type protein-like	-	1e-3	At3g54780	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.29	37.7	0.95	1617261_at	CA811086	hypothetical protein LOC100242760	-	6e-1	At1g76800	nodulin, putative	O.I.	H.G.	S.X.
0.29	37.7	0.95	1609009_at	CF210602	hypothetical protein LOC100267703	-	2e+0	At1g15880	GOS11 (golgi snare 11)	O.I.	H.G.	S.X.
0.29	37.7	0.96	1613740_at	BM436747	hypothetical protein LOC100248677	-	4e-63	At1g34370	STOP1 (sensitive to proton rhizotoxicity 1)	O.I.	H.G.	S.X.
0.27	34.0	0.95	1621047_at	CB968782	-	-	1e+0	At1g71050	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.
0.27	34.0	0.91	1616357_at	CF516994	hypothetical protein LOC100255530	-	5e-16	At2g17220	protein kinase, putative	O.I.	H.G.	S.X.
0.27	34.0	0.92	1618157_at	CF604041	hypothetical protein LOC100242926	-	9e-11	At3g21360	electron carrier/ oxidoreductase	O.I.	H.G.	S.X.
0.27	34.0	0.92	1618543_at	BQ792450	hypothetical protein LOC100263765	-	3e-8	At5g01710	-	O.I.	H.G.	S.X.
0.27	34.0	0.95	1622786_at	CF207035.1	hypothetical protein LOC100246765	-	2e-8	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	O.I.	H.G.	S.X.
0.27	34.0	0.95	1610454_s_at	CF207579	hypothetical protein LOC100245034	-	1e-47	At5g62740	band 7 family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.8 98.6 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.7 98.5 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.7 98.5 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.3 98.2 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.9 97.9 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.9 97.9 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2 97.1 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2 97.1 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.0 96.7 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7 96.2 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.8	98.6	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.7	98.5	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.7	98.5	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.3	98.2	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.9	97.9	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.9	97.9	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2	97.1	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2	97.1	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.0	96.7	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7	96.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	1620426_at
Gene name	similar to DNA-binding protein
Homology with Arabidopsis	Similar to At1g13960: WRKY4 (HF=1e-20)
Module size	6 genes
NF	0.49
%ile	73.4

Co-expression analysis

Gene ID 1620426_at Gene name similar to DNA-binding protein Homology with ArabidopsisSimilar to At1g13960: WRKY4 (HF=1e-20) Module size 6 genes NF 0.49 %ile 73.4

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1620426_at

Gene name similar to DNA-binding protein
Homology with Arabidopsis Similar to At1g13960: WRKY4 (HF=1e-20)

Module size 6 genes

NF 0.49

%ile 73.4

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays