Co-expression analysis

Gene ID	1620426_at
Gene name	similar to DNA-binding protein
Homology with Arabidopsis	Similar to At1g13960: WRKY4 (HF=1e-20)
Module size	6 genes
NF	0.49
%ile	73.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.96	1620426_at	CF515986	similar to DNA-binding protein	-	1e-20	At1g13960	WRKY4	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.96	1620491_at	CD800015	hypothetical protein LOC100257942	-	2e+0	At5g56540	AGP14 (ARABINOGALACTAN PROTEIN 14)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1615365_at	CB973771	hypothetical protein LOC100253158	-	2e-14	At1g54130	RSH3 (RELA/SPOT HOMOLOG 3)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1614977_at	CB978594	-	-	2e+1	At5g17480	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.96	1617496_s_at	BQ797047	hypothetical protein LOC100247953	-	7e-25	At3g12570	FYD	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	1617283_at	CF372456	hypothetical LOC100245758	-	4e-20	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	98.6	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.7	98.5	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.7	98.5	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.3	98.2	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.9	97.9	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.9	97.9	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2	97.1	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2	97.1	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.0	96.7	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7	96.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.795.1.A1_at, orthologous to the query gene, 1620426_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	ZmAffx.795.1.A1_at	At1g13960	-	-	3e-3	At5g46350	WRKY8	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.1115.1.A1_at	At1g13960	-	-	1e+0	At4g00210	LBD31 (LOB DOMAIN-CONTAINING PROTEIN 31)	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.17344.1.S1_at	At1g13960	-	-	4e+0	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.2521.1.A1_at	At1g13960	hypothetical protein LOC100276170	-	1e-2	At5g63980	SAL1	O.I.	H.G.	S.X.	Please select
0.35	38.9	ZmAffx.241.1.A1_at	At1g13960	-	-	3e+0	At1g75190	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.3288.1.A1_at	At1g13960	immediate-early protein RSP40	-	2e-2	At3g09032	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	ZmAffx.898.1.A1_at	At1g13960	-	-	8e-1	At3g15280	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.4299.1.S1_at	At1g13960	hypothetical protein LOC100279924	-	5e-14	At3g21630	CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.13669.2.A1_at	At1g13960	-	-	2e-9	At4g02630	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.6559.1.A1_at	At1g13960	-	-	3e-14	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.7540.1.S1_at	At1g13960	hypothetical protein LOC100192075	-	1e-5	At4g29130	HXK1 (HEXOKINASE 1)	O.I.	H.G.	S.X.	Please select
0.18	11.6	ZmAffx.852.1.A1_at	At1g13960	-	-	1e-11	At3g12690	AGC1.5 (AGC KINASE 1.5)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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