Co-expression analysis

Gene ID	1620426_at
Gene name	similar to DNA-binding protein
Homology with Arabidopsis	Similar to At1g13960: WRKY4 (HF=1e-20)
Module size	6 genes
NF	0.49
%ile	73.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.96	1620426_at	CF515986	similar to DNA-binding protein	-	1e-20	At1g13960	WRKY4	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.96	1620491_at	CD800015	hypothetical protein LOC100257942	-	2e+0	At5g56540	AGP14 (ARABINOGALACTAN PROTEIN 14)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1615365_at	CB973771	hypothetical protein LOC100253158	-	2e-14	At1g54130	RSH3 (RELA/SPOT HOMOLOG 3)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1614977_at	CB978594	-	-	2e+1	At5g17480	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.96	1617496_s_at	BQ797047	hypothetical protein LOC100247953	-	7e-25	At3g12570	FYD	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	1617283_at	CF372456	hypothetical LOC100245758	-	4e-20	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	98.6	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.7	98.5	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.7	98.5	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.3	98.2	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.9	97.9	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.9	97.9	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2	97.1	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2	97.1	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.0	96.7	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7	96.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.105562.1.S1_at, orthologous to the query gene, 1620426_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.105562.1.S1_at	At1g13960	-	-	3e-6	At1g13960	WRKY4	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.50680.1.S1_at	At1g13960	-	-	6e-1	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.29468.1.S1_at	At1g13960	-	-	1e+0	At2g03937	-	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.84346.1.S1_at	At1g13960	-	-	2e-2	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.47591.1.A1_at	At1g13960	-	-	2e+0	At3g27880	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.83715.1.S1_at	At1g13960	-	-	2e+1	At5g50740	metal ion binding	O.I.	H.G.	S.X.	Please select
0.21	25.5	TaAffx.23474.1.S1_at	At1g13960	-	-	1e-2	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.26652.1.A1_at	At1g13960	-	-	1e-3	At1g36050	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.11199.2.S1_at	At1g13960	-	-	7e+0	At5g08315	-	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.104952.1.S1_at	At1g13960	-	-	5e-1	At2g38780	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.61664.1.S1_at	At1g13960	-	-	2e-1	At1g59171	ATP binding / inositol pentakisphosphate 2-kinase	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.111761.1.S1_at	At1g13960	-	-	4e+0	At3g48700	ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13)	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.27409.1.S1_at	At1g13960	-	-	4e+0	At1g02405	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.8084.2.S1_at	At1g13960	-	-	3e-2	At5g02480	-	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.974.2.S1_at	At1g13960	-	-	5e+0	At3g28956	catalytic/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.120245.1.S1_at	At1g13960	-	-	1e-1	At4g17800	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.5807.2.S1_at	At1g13960	-	-	3e+0	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.	Please select
0.10	11.3	TaAffx.55653.1.S1_at	At1g13960	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	Ta.25608.2.S1_a_at	At1g13960	-	-	3e+0	At1g77765	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	TaAffx.119601.1.S1_at	At1g13960	-	-	9e+0	At5g59950	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.04	5.8	Ta.21785.1.S1_at	At1g13960	-	-	8e+0	At3g27410	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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