Co-expression analysis

Gene ID	1620426_at
Gene name	similar to DNA-binding protein
Homology with Arabidopsis	Similar to At1g13960: WRKY4 (HF=1e-20)
Module size	6 genes
NF	0.49
%ile	73.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.96	1620426_at	CF515986	similar to DNA-binding protein	-	1e-20	At1g13960	WRKY4	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.96	1620491_at	CD800015	hypothetical protein LOC100257942	-	2e+0	At5g56540	AGP14 (ARABINOGALACTAN PROTEIN 14)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1615365_at	CB973771	hypothetical protein LOC100253158	-	2e-14	At1g54130	RSH3 (RELA/SPOT HOMOLOG 3)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1614977_at	CB978594	-	-	2e+1	At5g17480	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.96	1617496_s_at	BQ797047	hypothetical protein LOC100247953	-	7e-25	At3g12570	FYD	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	1617283_at	CF372456	hypothetical LOC100245758	-	4e-20	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	98.6	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.7	98.5	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.7	98.5	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.3	98.2	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.9	97.9	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.9	97.9	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2	97.1	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.2	97.1	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.0	96.7	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7	96.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.204127.1.S1_at, orthologous to the query gene, 1620426_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	PtpAffx.204127.1.S1_at	At1g13960	hypothetical protein	-	6e-23	At1g13960	WRKY4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.6009.1.S1_at	At1g13960	hypothetical protein	-	6e-25	At3g12800	SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.960.1.A1_at	At1g13960	hypothetical protein	-	2e-2	At3g15090	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.7173.1.A1_at	At1g13960	hypothetical protein	-	1e+0	At4g12220	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.20153.1.S1_at	At1g13960	hypothetical protein	-	1e-30	At2g44530	ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	Ptp.3742.1.S1_at	At1g13960	thioredoxin y	-	9e-1	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.278.1.A1_at	At1g13960	hypothetical protein	-	7e-12	At5g24690	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.206644.1.S1_s_at	At1g13960	hypothetical protein	-	8e-16	At2g26350	PEX10	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	Ptp.5732.1.S1_s_at	At1g13960	hypothetical protein	-	6e-10	At2g44060	late embryogenesis abundant family protein / LEA family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	Ptp.5968.1.A1_at	At1g13960	hypothetical protein	-	3e-20	At1g08530	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	Ptp.5873.1.A1_a_at	At1g13960	hypothetical protein	-	2e+0	At5g53100	oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.219777.1.S1_s_at	At1g13960	hypothetical protein	-	5e-60	At3g46100	ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.121714.1.S1_at	At1g13960	-	-	2e+1	At4g10150	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.215660.1.S1_s_at	At1g13960	hypothetical protein	-	1e-64	At4g12400	stress-inducible protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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