Co-expression analysis

Gene ID	1620384_s_at
Gene name	similar to Os04g0533900
Homology with Arabidopsis	Similar to At5g23760: heavy-metal-associated domain-containing protein (HF=8e-20)
Module size	7 genes
NF	0.47
%ile	70.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	0.94	1620384_s_at	CA809883	similar to Os04g0533900	-	8e-20	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1615750_at	CD800994	hypothetical protein LOC100261431	-	2e+0	At5g58787	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.95	1622020_s_at	BQ794212	hypothetical protein LOC100261607	-	1e-8	At4g20260	DREPP plasma membrane polypeptide family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1611386_at	CD799345	hypothetical protein LOC100266812	-	1e+0	At3g11230	yippee family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.96	1622639_at	CA810871	hypothetical protein LOC100254126	-	1e-4	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.95	1607534_at	CB345110	hypothetical protein LOC100248163	-	3e-11	At2g38460	ATIREG1 (IRON-REGULATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.95	1606722_at	AF440310.1	actin depolymerizing factor	-	1e-19	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.4	99.9	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
15.1	99.9	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.1	99.6	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.0	99.5	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.2	98.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.9	93.8	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.7	93.0	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.3	90.7	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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