Co-expression analysis

Gene ID 1620333_at
Gene name
Homology with ArabidopsisSimilar to At3g08020: protein binding / zinc ion binding (HF=1e-10)
Module size 6 genes
NF 0.22
%ile 31.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5072.70.951620333_atCF608264--1e-10At3g08020protein binding / zinc ion bindingO.I.H.G.S.X.
0.4464.10.961621260_atBQ797265--3e-1At4g30630unknown proteinO.I.H.G.S.X.
0.3345.70.971616682_atCF512457hypothetical protein LOC100266059-9e-37At4g18030dehydration-responsive family proteinO.I.H.G.S.X.
0.2428.70.951616416_atCB349840hypothetical protein LOC100251243-7e+0At3g43740leucine-rich repeat family proteinO.I.H.G.S.X.
0.1313.30.961606871_atCB970216hypothetical protein LOC100265666-1e-3At4g11090unknown proteinO.I.H.G.S.X.
0.1212.10.951613468_atCF405048hypothetical protein LOC100250231-3e-55At3g04730IAA16O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.896.4GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.595.7GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM147708Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation37Link to GEO
2.591.9GSM436388V. riparia (VR, PI588259) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM287877Green hard berry B12 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.390.7GSM287886Green soft berry C22 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.390.7GSM147741Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation70Link to GEO
2.289.9GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436396V. riparia (VR, PI588259) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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