Co-expression analysis

Gene ID 1620272_at
Gene name hypothetical protein LOC100252883
Homology with ArabidopsisSimilar to At2g37330: ALS3 (ALUMINUM SENSITIVE 3) (HF=2e+0)
Module size 6 genes
NF 0.57
%ile 83.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.971620272_atBQ797367hypothetical protein LOC100252883-2e+0At2g37330ALS3 (ALUMINUM SENSITIVE 3)O.I.H.G.S.X.
0.6787.90.971612870_s_atCF201540.1hypothetical protein LOC100267310-3e+0At2g18380transcription factorO.I.H.G.S.X.
0.4868.80.961610035_x_atCF202356.1hypothetical protein LOC100248145-4e-22At1g04410malate dehydrogenase, cytosolic, putativeO.I.H.G.S.X.
0.4464.10.971611528_atCF202616.1hypothetical protein LOC100254781-1e+0At5g45360F-box family proteinO.I.H.G.S.X.
0.4361.50.971609811_atCF208639--4e+0At5g37850SOS4 (SALT OVERLY SENSITIVE 4)O.I.H.G.S.X.
0.3548.50.971609018_atCF204139.1--1e+0At3g44580unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.797.7GSM287900Red soft berry C15 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.096.7GSM287898Red soft berry B14 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.096.7GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.896.4GSM287897Red soft berry C29 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.896.4GSM287894Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.896.4GSM287893Pink soft berry C12 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.796.2GSM287903Red soft berry A7 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM287901Red soft berry C16 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM287896Pink soft berry C27 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.395.2GSM287887Green soft berry C23 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage