Co-expression analysis

Gene ID	1620256_at
Gene name	sucrose transporter-like
Homology with Arabidopsis	Similar to At1g09960: SUT4 (SUCROSE TRANSPORTER 4) (HF=2e-29)
Module size	6 genes
NF	0.43
%ile	64.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	0.98	1620256_at	AF021808.1	sucrose transporter-like	-	2e-29	At1g09960	SUT4 (SUCROSE TRANSPORTER 4)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1610477_s_at	CA818657	manganese superoxide dismutase	-	4e-39	At3g10920	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1610574_at	CF510554	hypothetical protein LOC100264544	-	4e-38	At4g33090	APM1 (AMINOPEPTIDASE M1)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1622694_at	CB979125	hypothetical protein LOC100245090	-	2e-28	At3g12760	-	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1609387_at	CB978426	similar to FIP2 (FH protein interacting protein 2); voltage-gated potassium channel	-	4e-48	At5g55000	FIP2	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1616039_at	CF215123	hypothetical protein LOC100248352	-	1e-20	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.5	91.9	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage