Co-expression analysis

Gene ID	1620234_at
Gene name	hypothetical protein LOC100255239
Homology with Arabidopsis	Similar to At3g23050: IAA7 (INDOLE-3-ACETIC ACID 7) (HF=4e+0)
Module size	40 genes
NF	0.22
%ile	31.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.99	100.0	0.92	1620234_at	CA816993	hypothetical protein LOC100255239	-	4e+0	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.95	1619864_at	CD721451	hypothetical protein LOC100261391	-	4e-10	At3g09970	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.96	1614576_s_at	BM436293	hypothetical protein LOC100245884	-	1e-32	At3g23490	CYN (CYANASE)	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.94	1608972_at	BM437326	hypothetical protein LOC100267873	-	1e-1	At2g33270	ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.92	1609638_at	CB001362	-	-	3e+0	At2g28800	ALB3 (ALBINO 3)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.96	1610825_at	CA813970	hypothetical protein LOC100244060	-	2e-2	At3g28070	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.96	1618020_x_at	CB972570	hypothetical protein LOC100267942	-	8e-4	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.94	1622857_at	CB001399	-	-	5e-2	At4g17040	ATP-dependent Clp protease proteolytic subunit, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.95	1616345_at	CB920761	hypothetical protein LOC100241649	-	1e-9	At4g30810	scpl29 (serine carboxypeptidase-like 29)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.95	1612957_at	CF513158	hypothetical protein LOC100248904	-	3e-10	At1g22310	MBD8	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.96	1622463_at	CB977897	hypothetical protein LOC100252976	-	2e-22	At1g21065	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.94	1614328_at	CF205824.1	-	-	1e+0	At2g03640	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.96	1615207_at	CD715247	hypothetical protein LOC100256133	-	2e-8	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.97	1620873_at	CB339891	hypothetical protein LOC100247687	-	1e-15	At2g37660	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.94	1621037_at	CB980438	-	-	5e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.96	1620067_at	CB001941	-	-	1e+1	At5g64530	XND1	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.95	1609587_at	CF202068.1	-	-	5e-9	At1g32220	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.95	1608414_x_at	CF204375.1	-	-	2e+0	At1g48940	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1607413_at	CF607927	hypothetical protein LOC100264560	-	2e-25	At3g52950	CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1619591_at	CB343124	hypothetical protein LOC100265473	-	5e-36	At5g16620	TIC40	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.97	1607335_at	CD801694	hypothetical protein LOC100245908	-	1e-20	At3g06050	PRXIIF (PEROXIREDOXIN IIF)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.96	1612555_s_at	CB979725	hypothetical protein LOC100246037	-	8e+0	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.96	1617022_at	BQ794782	hypothetical protein LOC100265005	-	6e+0	At3g52300	ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.97	1621694_at	CB974539	hypothetical protein LOC100251009	-	7e-12	At5g17560	BolA-like family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1614839_s_at	CB978167	hypothetical protein LOC100251023	-	3e-10	At1g04290	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.94	1610585_at	CF404844	hypothetical protein LOC100244105	-	1e+0	At5g63000	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1617187_at	CB973607	hypothetical protein LOC100254109	-	3e-4	At2g35360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1615994_at	CF414169	hypothetical protein LOC100263086	-	1e+0	At5g18540	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.95	1615098_at	CF208489	-	-	1e-80	Atcg00670	-	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.95	1606787_at	CF373239	hypothetical protein LOC100258674	-	4e-1	At1g13620	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.96	1614898_at	CF512424	hypothetical protein LOC100246217	-	4e-12	At1g08490	CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.98	1613951_at	CF404624	hypothetical protein LOC100242676	-	1e-13	At3g06350	MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1620220_at	CB345823	hypothetical protein LOC100243115	-	7e-46	At5g54760	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.96	1618787_at	CF212293	hypothetical protein LOC100245562	-	2e-21	At5g56940	ribosomal protein S16 family protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.95	1612421_at	CF213299	hypothetical protein LOC100262002	-	4e+0	At5g13080	WRKY75	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.96	1611098_at	CF519133	-	-	1e-3	At5g51180	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.97	1614715_at	CB972151	hypothetical protein LOC100254787	-	8e-55	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.96	1622757_at	CF510915	hypothetical protein LOC100253200	-	8e-6	At1g65580	FRA3 (FRAGILE FIBER3)	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.96	1612000_at	CB342454	hypothetical protein LOC100260307	-	2e-1	At1g27130	ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.97	1615020_at	CF215189	hypothetical protein LOC100255532	-	1e+0	At3g11250	60S acidic ribosomal protein P0 (RPP0C)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	91.9	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.7	84.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.7	84.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.7	84.7	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
1.6	83.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.6	83.3	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.6	83.3	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.6	83.3	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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