Co-expression analysis

Gene ID	1620225_s_at
Gene name
Homology with Arabidopsis	Similar to At5g38720: unknown protein (HF=1e+0)
Module size	13 genes
NF	0.84
%ile	98.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.92	1620225_s_at	CD798094	-	-	1e+0	At5g38720	unknown protein	O.I.	H.G.	S.X.	Please select
0.92	99.0	0.94	1606845_at	CF212991	hypothetical protein LOC100257315	-	1e+0	At3g52510	-	O.I.	H.G.	S.X.	Please select
0.92	99.0	0.95	1616735_at	CF604749	hypothetical protein LOC100257315	-	1e+0	At5g50470	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	O.I.	H.G.	S.X.	Please select
0.89	95.5	0.92	1612288_at	CB969093	-	-	3e-1	At4g09040	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.89	95.5	0.93	1618561_at	CF204500.1	hypothetical protein LOC100246875	-	2e-5	At3g03980	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.89	95.5	0.95	1617334_s_at	CF607954	-	-	1e-9	At5g65660	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.87	95.2	0.93	1606462_at	CA817195	hypothetical protein LOC100248701	-	1e+0	At1g04970	lipid-binding serum glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.94	1621244_s_at	CD797552	hypothetical protein LOC100246875	-	2e-5	At3g03980	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.82	93.9	0.95	1622012_at	CF204966.1	-	-	2e-2	At1g62760	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.94	1606429_at	CF373019	hypothetical protein LOC100251832	-	2e-1	At4g12390	PME1 (PECTIN METHYLESTERASE INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.74	91.0	0.94	1609555_at	CD719835	hypothetical protein LOC100261123	-	2e-30	At5g08790	ATAF2	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.92	1618703_at	CB346386	hypothetical protein LOC100249546	-	6e-2	At2g47350	PAPA-1-like family protein / zinc finger (HIT type) family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.95	1620319_s_at	CF205531.1	R2R3 Myb14 transcription factor	-	9e-2	At4g11660	AT-HSFB2B	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.4	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.3	90.7	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
2.1	89.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.1	89.1	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.1	89.1	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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