Co-expression analysis

Gene ID 1620220_at
Gene name hypothetical protein LOC100243115
Homology with ArabidopsisSimilar to At5g54760: eukaryotic translation initiation factor SUI1, putative (HF=7e-46)
Module size 12 genes
NF 0.42
%ile 62.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5577.30.981620220_atCB345823hypothetical protein LOC100243115-7e-46At5g54760eukaryotic translation initiation factor SUI1, putativeO.I.H.G.S.X.
0.6183.20.981607335_atCD801694hypothetical protein LOC100245908-1e-20At3g06050PRXIIF (PEROXIREDOXIN IIF)O.I.H.G.S.X.
0.5779.80.981622075_atCD799862--2e-16At5g20990B73O.I.H.G.S.X.
0.4564.60.981611911_atCF212492hypothetical protein LOC100266461-1e-121At5g08530CI51 (51 kDa subunit of complex I)O.I.H.G.S.X.
0.4464.10.981615943_atCB971749hypothetical protein LOC100266273-5e-14At1g51980mitochondrial processing peptidase alpha subunit, putativeO.I.H.G.S.X.
0.4361.50.981613951_atCF404624hypothetical protein LOC100242676-1e-13At3g06350MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)O.I.H.G.S.X.
0.3853.60.981622610_atCF413855hypothetical protein LOC100264665-5e-6At5g15090VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3)O.I.H.G.S.X.
0.3650.70.981614881_atCF210464hypothetical protein LOC100261031-1e-153At5g08670ATP binding / hydrogen ion transporting ATP synthase, rotational mechanismO.I.H.G.S.X.
0.3345.70.981617811_s_atBQ794232hypothetical protein LOC100254399-4e-14At2g21870unknown proteinO.I.H.G.S.X.
0.3141.30.981606432_atCD013716hypothetical protein LOC100242349-1e-4At4g39690unknown proteinO.I.H.G.S.X.
0.2937.70.981615020_atCF215189hypothetical protein LOC100255532-1e+0At3g1125060S acidic ribosomal protein P0 (RPP0C)O.I.H.G.S.X.
0.2734.00.991609881_atBQ79208526S proteasome regulatory subunit-3e-169At1g53750RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.397.2GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.692.5GSM436347Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436409V. riparia (VR, PI588259) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436349Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436369Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436350Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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