Co-expression analysis

Gene ID	1620214_at
Gene name	hypothetical protein LOC100252624
Homology with Arabidopsis	Similar to At5g39950: ATTRX2 (THIOREDOXIN 2) (HF=1e+0)
Module size	6 genes
NF	0.56
%ile	83.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.98	1620214_at	CF372945	hypothetical protein LOC100252624	-	1e+0	At5g39950	ATTRX2 (THIOREDOXIN 2)	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.98	1612618_at	BQ792225	-	-	3e-7	At3g48030	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1610276_s_at	CB346407	hypothetical protein LOC100244121	-	7e-6	At5g40370	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1616609_at	BM437555	hypothetical protein LOC100247612	-	4e-7	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.98	1617562_at	CF512363	hypothetical protein LOC100246010	-	5e-60	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1617530_s_at	CA812136	hypothetical protein LOC100258272	-	3e-4	At3g12260	complex 1 family protein / LVR family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.8	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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