Co-expression analysis

Gene ID	1620213_at
Gene name	hypothetical protein LOC100252268
Homology with Arabidopsis	Similar to At1g13600: AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58) (HF=5e-1)
Module size	10 genes
NF	0.61
%ile	87.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.45	64.6	0.98	1620213_at	CB981229	hypothetical protein LOC100252268	-	5e-1	At1g13600	AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)	O.I.	H.G.	S.X.	Please select
0.78	92.6	0.99	1610193_at	CF214569	hypothetical protein LOC100242819	-	1e-53	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	1610092_at	BQ794603	hypothetical protein LOC100250286	-	2e-18	At5g18380	40S ribosomal protein S16 (RPS16C)	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.99	1607915_at	CF214306	hypothetical protein LOC100246504	-	4e-50	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.99	1621022_at	BQ794425	hypothetical protein LOC100255295	-	7e-43	At3g02080	40S ribosomal protein S19 (RPS19A)	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.99	1608096_at	CB978907	hypothetical protein LOC100264515	-	6e-59	At5g39850	40S ribosomal protein S9 (RPS9C)	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.99	1621149_at	CF514701	similar to 60S ribosomal protein L19	-	3e-79	At1g02780	emb2386 (embryo defective 2386)	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.99	1613860_s_at	CF512506	cyc07	-	6e-38	At3g04840	40S ribosomal protein S3A (RPS3aA)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.99	1615194_at	CF373310	hypothetical protein LOC100256025	-	3e-29	At1g77940	60S ribosomal protein L30 (RPL30B)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.99	1614350_at	CF517395	hypothetical protein LOC100242146	-	4e-72	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436384	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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