Co-expression analysis

Gene ID	1620193_at
Gene name	hypothetical protein LOC100242947
Homology with Arabidopsis	Similar to At5g38660: APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) (HF=1e-32)
Module size	8 genes
NF	0.29
%ile	41.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	91.0	0.95	1620193_at	CA816858	hypothetical protein LOC100242947	-	1e-32	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1612205_s_at	BQ792162	hypothetical protein LOC100243555	-	1e-13	At3g03890	FMN binding	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1611042_at	CB348049	hypothetical protein LOC100244390	-	9e-5	At3g20270	lipid-binding serum glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1607964_s_at	BM437259	hypothetical protein LOC100257686	-	4e-1	At5g08410	FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.95	1611421_at	CF511233	hypothetical LOC100253088	-	3e-1	At5g50330	ATP binding / protein kinase	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1607912_at	CD800716	hypothetical protein LOC100241124	-	2e-11	At5g05980	ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B)	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.97	1611423_s_at	CB916855	hypothetical protein LOC100254781	-	4e+0	At4g01430	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.98	1622302_s_at	CF207602	hypothetical protein LOC100245459	-	2e-19	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	98.4	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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