CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1620155_at

Gene name hypothetical protein LOC100242363
Homology with Arabidopsis Similar to At3g56970: BHLH038 (HF=1e+0)

Module size 16 genes

NF 0.38

%ile 56.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.68 88.0 0.95 1620155_at CB969445 hypothetical protein LOC100242363 - 1e+0 At3g56970 BHLH038 O.I. H.G. S.X.
0.59 80.6 0.98 1611914_at BQ796358 hypothetical protein LOC100261398 - 2e+0 At4g14660 NRPE7 O.I. H.G. S.X.
0.52 73.9 0.97 1608722_at BQ792556 hypothetical protein LOC100252840 - 1e-1 At5g40630 ubiquitin family protein O.I. H.G. S.X.
0.52 73.9 0.97 1619977_at BQ794993 hypothetical protein LOC100251508 - 3e-27 At2g22540 SVP (SHORT VEGETATIVE PHASE) O.I. H.G. S.X.
0.50 72.7 0.96 1617568_at CF511076 hypothetical protein LOC100247517 - 1e+0 At5g07571 - O.I. H.G. S.X.
0.47 67.7 0.97 1619047_at CD012487 hypothetical protein LOC100253286 - 7e-11 At3g16980 NRPB9A O.I. H.G. S.X.
0.42 60.1 0.97 1606662_at CB979542 similar to somatic embryogenesis receptor kinase - 6e-59 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) O.I. H.G. S.X.
0.39 54.9 0.98 1620990_at CF511811 hypothetical protein LOC100247103 - 1e-18 At1g19330 unknown protein O.I. H.G. S.X.
0.38 53.6 0.98 1612994_at CF415215 hypothetical protein LOC100255224 - 4e-17 At1g74520 ATHVA22A O.I. H.G. S.X.
0.36 50.7 0.97 1611382_at CF212352 hypothetical protein LOC100264955 - 2e-6 At3g53850 - O.I. H.G. S.X.
0.35 48.5 0.97 1609008_at CB975099 - - 1e+0 At5g36500 - O.I. H.G. S.X.
0.29 37.7 0.96 1613351_at CB972999 hypothetical protein LOC100252023 - 2e-1 At5g12970 C2 domain-containing protein O.I. H.G. S.X.
0.28 37.7 0.97 1612665_at CB347047 - - 3e-10 At2g27040 AGO4 (ARGONAUTE 4) O.I. H.G. S.X.
0.28 37.7 0.97 1607278_at CF602998 hypothetical protein LOC100252274 - 5e-1 At3g03590 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.25 30.5 0.97 1612954_at CF404452 hypothetical protein LOC100257012 - 4e-1 At3g55070 - O.I. H.G. S.X.
0.20 22.4 0.96 1620703_at CD800445 hypothetical protein LOC100261617 - 2e-17 At1g16520 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.5 91.9 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM436384 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM436387 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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