Co-expression analysis

Gene ID	1620102_at
Gene name
Homology with Arabidopsis	Similar to Atcg00540: - (HF=0)
Module size	6 genes
NF	0.30
%ile	43.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.92	1620102_at	CF514700	-	-	0	Atcg00540	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.93	1615731_at	CD801373	hypothetical protein LOC100264968	-	2e-12	At2g04030	CR88	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.95	1612526_s_at	CF514700	-	-	0	Atcg00540	-	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.92	1613137_at	BQ792300	-	-	0	Atcg00180	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.93	1612010_at	CB342277	hypothetical protein LOC100251079	-	1e+0	At4g23770	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.92	1622862_at	CB004075	-	-	1e-38	Atcg00440	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM436366	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436395	V. riparia (VR, PI588259) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the Arabidopsis gene, Atcg00540, orthologous to the query gene, 1620102_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.	Other DB

Select a plant to compare co-expressed genes between species.

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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