Co-expression analysis

Gene ID	1620092_at
Gene name	hypothetical LOC100246138
Homology with Arabidopsis	Similar to At2g25000: WRKY60 (HF=2e-1)
Module size	7 genes
NF	0.21
%ile	30.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.90	1620092_at	CB340912	hypothetical LOC100246138	-	2e-1	At2g25000	WRKY60	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.94	1613286_at	CF209004	-	-	5e+0	At3g54560	HTA11	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.91	1620970_at	CF404321	-	-	4e+0	At2g13150	transcription factor	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.91	1617449_at	CD010357	-	-	0	Atmg00570	-	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.92	1607292_s_at	BQ792973	-	-	0	Atmg00580	-	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.91	1619830_at	CB969902	hypothetical protein LOC100249008 /// hypothetical protein LOC100257602	-	2e-1	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.92	1617456_at	CD717807	-	-	9e-8	Atmg01060	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.2	99.7	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.5	98.4	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.6	97.6	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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