Co-expression analysis

Gene ID	1620080_at
Gene name	hypothetical protein LOC100252174
Homology with Arabidopsis	Similar to At4g23230: protein kinase family protein (HF=5e-3)
Module size	6 genes
NF	0.60
%ile	87.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.90	1620080_at	CB345665	hypothetical protein LOC100252174	-	5e-3	At4g23230	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.90	1612102_at	CF210021	-	-	1e+0	At2g18630	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.90	1622123_at	CB976684	-	-	2e+1	At5g48175	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.88	1610175_at	CF406032	hypothetical protein LOC100248474	-	2e-2	At5g53380	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.90	1618459_at	CD799037	hypothetical protein LOC100266526	-	2e-2	At1g06650	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.90	1610435_s_at	CB340175	hypothetical protein LOC100261843	-	2e-3	At5g44280	RING1A (RING 1A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	97.1	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.1	96.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.1	89.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.0	88.2	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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