Co-expression analysis

Gene ID 1620080_at
Gene name hypothetical protein LOC100252174
Homology with ArabidopsisSimilar to At4g23230: protein kinase family protein (HF=5e-3)
Module size 6 genes
NF 0.60
%ile 87.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.60.901620080_atCB345665hypothetical protein LOC100252174-5e-3At4g23230protein kinase family proteinO.I.H.G.S.X.
0.6787.90.901612102_atCF210021--1e+0At2g18630unknown proteinO.I.H.G.S.X.
0.5577.30.901622123_atCB976684--2e+1At5g48175unknown proteinO.I.H.G.S.X.
0.5072.70.881610175_atCF406032hypothetical protein LOC100248474-2e-2At5g53380unknown proteinO.I.H.G.S.X.
0.4666.50.901618459_atCD799037hypothetical protein LOC100266526-2e-2At1g066502-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.3345.70.901610435_s_atCB340175hypothetical protein LOC100261843-2e-3At5g44280RING1A (RING 1A)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.297.1GSM299458D_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
4.196.9GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.395.2GSM299452B_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.094.2GSM299454B_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.289.9GSM299455C_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.289.9GSM436347Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.189.1GSM147708Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation37Link to GEO
2.189.1GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
2.088.2GSM436426V. riparia (VR, PI588259) SD, 13h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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