Co-expression analysis

Gene ID 1620035_at
Gene name
Homology with ArabidopsisSimilar to At1g23490: ATARF1 (ADP-RIBOSYLATION FACTOR 1) (HF=3e-13)
Module size 6 genes
NF 0.19
%ile 27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.861620035_atCF405893--3e-13At1g23490ATARF1 (ADP-RIBOSYLATION FACTOR 1)O.I.H.G.S.X.
0.1920.90.971621144_atCA816855hypothetical protein LOC100257210-2e+0At3g29636transferase-relatedO.I.H.G.S.X.
0.1819.40.981616981_atCB971105phospholipase D alpha-4e-52At3g15730PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)O.I.H.G.S.X.
0.1718.20.981608869_s_atCF514065glyceraldehyde-3-phosphate dehydrogenase-4e-41At3g04120GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)O.I.H.G.S.X.
0.1313.30.971621583_atCF404733hypothetical protein LOC100266937-3e-12At1g05850POM1 (POM-POM1)O.I.H.G.S.X.
0.088.50.981618681_atBQ797518hypothetical protein LOC100241923-1e-30At1g49760PAB8 (POLY(A) BINDING PROTEIN 8)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4464.10.961612054_atCF213303hypothetical protein LOC100248963-3e-25At1g19650SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putativeO.I.H.G.S.X.
0.3650.70.961610192_atCD714957hypothetical protein LOC100260008-7e-15At1g30360ERD4 (early-responsive to dehydration 4)O.I.H.G.S.X.
0.3650.70.981612593_atCF404943similar to stpk1 protein kinase-5e-3At5g55910D6PK (D6 PROTEIN KINASE)O.I.H.G.S.X.
0.3650.70.981607507_atCF415695hypothetical protein LOC100265985-5e-3At3g61050NTMC2T4O.I.H.G.S.X.
0.3548.50.971622606_atCB910226GDP-D-mannose pyrophosphorylase-4e-157At2g39770CYT1 (CYTOKINESIS DEFECTIVE 1)O.I.H.G.S.X.
0.3345.70.941607317_atCB975740--3e-10At1g54690GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)O.I.H.G.S.X.
0.3345.70.981615517_x_atAF188844.1aquaporin-like-3e-43At4g00430PIP1O.I.H.G.S.X.
0.3141.30.961613228_atBQ800343hypothetical protein LOC100267925-7e-12At2g14910unknown proteinO.I.H.G.S.X.
0.3141.30.981609313_atCF403611similar to 2-oxo acid dehydrogenase, lipoyl-binding site-6e-2At4g22320unknown proteinO.I.H.G.S.X.
0.2937.70.951614874_atBQ799894similar to latex-abundant protein-1e+0At1g79330ATMC5 (ARABIDOPSIS THALIANA METACASPASE 5)O.I.H.G.S.X.
0.2937.70.961607049_s_atCF514518metallothionein-5e-19At3g09390MT2A (METALLOTHIONEIN 2A)O.I.H.G.S.X.
0.2734.00.981612563_s_atCF202478.1hypothetical protein LOC100242819-3e-3At3g50550unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.297.1GSM436367Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.996.6GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.495.5GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.395.2GSM147678Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation7Link to GEO
3.294.9GSM322364genotype: Chardonnay - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.094.2GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.893.4GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.793.0GSM436347Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436349Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436368Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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