CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1620035_at

Gene name
Homology with Arabidopsis Similar to At1g23490: ATARF1 (ADP-RIBOSYLATION FACTOR 1) (HF=3e-13)

Module size 6 genes

NF 0.19

%ile 27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.86 1620035_at CF405893 - - 3e-13 At1g23490 ATARF1 (ADP-RIBOSYLATION FACTOR 1) O.I. H.G. S.X.
0.19 20.9 0.97 1621144_at CA816855 hypothetical protein LOC100257210 - 2e+0 At3g29636 transferase-related O.I. H.G. S.X.
0.18 19.4 0.98 1616981_at CB971105 phospholipase D alpha - 4e-52 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) O.I. H.G. S.X.
0.17 18.2 0.98 1608869_s_at CF514065 glyceraldehyde-3-phosphate dehydrogenase - 4e-41 At3g04120 GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) O.I. H.G. S.X.
0.13 13.3 0.97 1621583_at CF404733 hypothetical protein LOC100266937 - 3e-12 At1g05850 POM1 (POM-POM1) O.I. H.G. S.X.
0.08 8.5 0.98 1618681_at BQ797518 hypothetical protein LOC100241923 - 1e-30 At1g49760 PAB8 (POLY(A) BINDING PROTEIN 8) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.2 97.1 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.4 95.5 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.3 95.2 GSM147678 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 7
3.2 94.9 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.0 94.2 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.8 93.4 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.7 93.0 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.663.2.S1_x_at, orthologous to the query gene, 1620035_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 86.0 Ptp.663.2.S1_x_at At1g23490 - - 1e-143 At1g70490 ARFA1D O.I. H.G. S.X.
0.57 84.2 Ptp.2558.1.S1_at At1g23490 hypothetical protein - 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) O.I. H.G. S.X.
0.43 69.7 Ptp.2672.1.A1_at At1g23490 hypothetical protein - 1e-67 At1g51590 mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative O.I. H.G. S.X.
0.33 57.5 Ptp.697.1.A1_s_at At1g23490 hypothetical protein - 6e-10 At3g44110 ATJ3 O.I. H.G. S.X.
0.29 50.5 PtpAffx.43623.2.A1_a_at At1g23490 hypothetical protein - 7e-5 At3g03610 phagocytosis and cell motility protein ELMO1-related O.I. H.G. S.X.
0.27 47.1 Ptp.2450.1.S1_at At1g23490 hypothetical protein - 9e-111 At2g16510 vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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