Co-expression analysis

Gene ID	1620035_at
Gene name
Homology with Arabidopsis	Similar to At1g23490: ATARF1 (ADP-RIBOSYLATION FACTOR 1) (HF=3e-13)
Module size	6 genes
NF	0.19
%ile	27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.86	1620035_at	CF405893	-	-	3e-13	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1621144_at	CA816855	hypothetical protein LOC100257210	-	2e+0	At3g29636	transferase-related	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.98	1616981_at	CB971105	phospholipase D alpha	-	4e-52	At3g15730	PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.98	1608869_s_at	CF514065	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1621583_at	CF404733	hypothetical protein LOC100266937	-	3e-12	At1g05850	POM1 (POM-POM1)	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.98	1618681_at	BQ797518	hypothetical protein LOC100241923	-	1e-30	At1g49760	PAB8 (POLY(A) BINDING PROTEIN 8)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	97.1	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7
3.2	94.9	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the soybean gene, Gma.4707.2.S1_at, orthologous to the query gene, 1620035_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	Gma.4707.2.S1_at	At1g23490	-	-	4e-131	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select
0.73	88.9	Gma.9951.1.S1_at	At1g23490	-	-	3e-7	At4g34700	complex 1 family protein / LVR family protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	Gma.11398.2.A1_s_at	At1g23490	-	-	2e-21	At1g70490	ARFA1D	O.I.	H.G.	S.X.	Please select
0.53	74.2	Gma.10722.1.S1_at	At1g23490	triosephosphate isomerase	-	1e-11	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.15407.2.S1_s_at	At1g23490	-	-	4e-38	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.2921.1.A1_s_at	At1g23490	-	-	4e-6	At3g56020	60S ribosomal protein L41 (RPL41G)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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