Co-expression analysis

Gene ID	1620019_at
Gene name	hypothetical protein LOC100258966
Homology with Arabidopsis	Similar to At4g38690: 1-phosphatidylinositol phosphodiesterase-related (HF=1e-9)
Module size	6 genes
NF	0.04
%ile	9.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.91	1620019_at	CB968892	hypothetical protein LOC100258966	-	1e-9	At4g38690	1-phosphatidylinositol phosphodiesterase-related	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.96	1608046_at	CK138155.1	hypothetical protein LOC100258362	-	2e-2	At1g17700	PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.97	1609966_a_at	BQ798735	hypothetical protein LOC100249980 /// hypothetical protein LOC100245503	-	3e-1	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.96	1618512_at	BQ795722	hypothetical protein LOC100252904	-	5e-7	At5g06330	hairpin-responsive protein, putative (HIN1)	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.95	1622606_at	CB910226	GDP-D-mannose pyrophosphorylase	-	4e-157	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.95	1614451_at	CB980820	similar to FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein	-	3e-58	At4g36080	FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	97.7	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.1	96.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.2	89.9	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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