Co-expression analysis

Gene ID	1619996_at
Gene name
Homology with Arabidopsis	Similar to At2g47490: mitochondrial substrate carrier family protein (HF=4e-29)
Module size	15 genes
NF	0.08
%ile	15.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.90	1619996_at	BM437454	-	-	4e-29	At2g47490	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.92	1617487_at	CD720403	-	-	2e-18	At1g57590	carboxylesterase	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.95	1622228_at	CF568837	-	-	4e-68	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.93	1613478_at	CF609114	hypothetical protein LOC100245702	-	2e-14	At2g19570	CDA1 (CYTIDINE DEAMINASE 1)	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.94	1617934_at	BM437104	-	-	1e-76	At2g34590	transketolase family protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.94	1622053_at	BQ798028	-	-	7e-8	At5g11060	KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4)	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.95	1620794_at	CF568783	-	-	3e-13	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.95	1610105_at	CF206332.1	-	-	2e-77	At1g52280	AtRABG3d (Arabidopsis Rab GTPase homolog G3d)	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.95	1621568_at	CF415414	hypothetical protein LOC100252433	-	1e+0	At2g07721	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.95	1616747_at	CF205411.1	-	-	1e-15	At4g09012	-	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.92	1619433_at	CD717897	-	-	7e-49	At5g25220	KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.93	1608589_at	CB003279	-	-	4e-19	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.93	1617607_at	CB918932	-	-	3e-2	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.93	1608741_s_at	CF206716.1	-	-	2e+0	At1g11110	-	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.92	1606450_at	CD712784	-	-	2e-12	At3g20560	ATPDIL5-3 (PDI-LIKE 5-3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.2	89.9	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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