Co-expression analysis

Gene ID	1619977_at
Gene name	hypothetical protein LOC100251508
Homology with Arabidopsis	Similar to At2g22540: SVP (SHORT VEGETATIVE PHASE) (HF=3e-27)
Module size	6 genes
NF	0.66
%ile	91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.97	1619977_at	BQ794993	hypothetical protein LOC100251508	-	3e-27	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.97	1608722_at	BQ792556	hypothetical protein LOC100252840	-	1e-1	At5g40630	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1611914_at	BQ796358	hypothetical protein LOC100261398	-	2e+0	At4g14660	NRPE7	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1612994_at	CF415215	hypothetical protein LOC100255224	-	4e-17	At1g74520	ATHVA22A	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.97	1619047_at	CD012487	hypothetical protein LOC100253286	-	7e-11	At3g16980	NRPB9A	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1612954_at	CF404452	hypothetical protein LOC100257012	-	4e-1	At3g55070	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	91.9	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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