Co-expression analysis

Gene ID	1619976_at
Gene name	hypothetical protein LOC100266753
Homology with Arabidopsis	Similar to At1g20823: zinc finger (C3HC4-type RING finger) family protein (HF=4e-19)
Module size	7 genes
NF	0.11
%ile	19.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.96	1619976_at	CF604790	hypothetical protein LOC100266753	-	4e-19	At1g20823	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.96	1612034_at	CF207955	hypothetical protein LOC100265881	-	5e-1	At5g62290	nucleotide-sensitive chloride conductance regulator (ICln) family protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.97	1608277_at	CA816391	hypothetical protein LOC100249980	-	3e-75	At4g12230	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1617788_at	CF207517	hypothetical protein LOC100243898	-	2e-2	At4g18000	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.96	1615479_at	CA815857	hypothetical protein LOC100250632	-	2e-5	At1g26690	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	0.97	1612066_at	CF607715	beclin 1 protein	-	5e-48	At3g61710	autophagy protein Apg6 family	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.96	1607571_at	CF373263	hypothetical protein LOC100259830	-	1e-13	At3g50845	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	97.1	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.0	96.7	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.9	96.6	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM147683	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	12
2.2	89.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.2	89.9	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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