CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1619910_at

Gene name
Homology with Arabidopsis Similar to At3g27410: unknown protein (HF=2e-1)

Module size 6 genes

NF 0.14

%ile 22.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.85 1619910_at CF405078 - - 2e-1 At3g27410 unknown protein O.I. H.G. S.X.
0.60 81.9 0.95 1610936_at CB972355 hypothetical protein LOC100259946 - 2e-1 At3g14870 unknown protein O.I. H.G. S.X.
0.44 64.1 0.97 1610370_s_at CB975555 hypothetical protein LOC100243953 - 1e+0 At5g22430 unknown protein O.I. H.G. S.X.
0.33 45.7 0.96 1609022_at CF371738 hypothetical protein LOC100250008 - 1e+0 At4g13690 unknown protein O.I. H.G. S.X.
0.31 41.3 0.96 1617350_at CB975555 hypothetical protein LOC100243953 - 1e+0 At5g22430 unknown protein O.I. H.G. S.X.
0.03 4.2 0.93 1620155_at CB969445 hypothetical protein LOC100242363 - 1e+0 At3g56970 BHLH038 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.29	37.7	0.97	1618413_at	BQ797853	hypothetical protein LOC100256600	-	0	At4g14960	TUA6	O.I.	H.G.	S.X.
0.28	37.7	0.94	1622870_at	CB348576	hypothetical protein LOC100245835	-	3e-13	At4g25750	ABC transporter family protein	O.I.	H.G.	S.X.
0.25	30.5	0.94	1609376_at	CB981321	hypothetical protein LOC100258158	-	4e-16	At3g19820	DWF1 (DWARF 1)	O.I.	H.G.	S.X.
0.23	27.5	0.91	1613467_at	CF212805	hypothetical protein LOC100260626	-	2e-5	At2g34700	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.
0.22	25.6	0.94	1616392_at	CF372646	-	-	2e-1	At5g09800	U-box domain-containing protein	O.I.	H.G.	S.X.
0.19	20.9	0.96	1619687_at	CD798741	hypothetical protein LOC100242388	-	2e+0	At5g53880	unknown protein	O.I.	H.G.	S.X.
0.17	18.2	0.91	1618023_at	CF214261	hypothetical protein LOC100266064	-	3e-4	At1g18520	TET11 (TETRASPANIN11)	O.I.	H.G.	S.X.
0.16	16.7	0.96	1616767_at	CF213759	hypothetical protein LOC100259220	-	4e+0	At4g03298	unknown protein	O.I.	H.G.	S.X.
0.15	15.6	0.94	1613776_at	BQ796788	hypothetical LOC100254074	-	3e-9	At1g19850	MP (MONOPTEROS)	O.I.	H.G.	S.X.
0.13	13.3	0.95	1616573_at	CD800557	similar to Callose synthase 3	-	5e-14	At1g05570	CALS1 (CALLOSE SYNTHASE 1)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.2 98.2 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.2 98.2 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.4 97.3 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.9 93.8 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.8 93.4 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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