Co-expression analysis

Gene ID	1619910_at
Gene name
Homology with Arabidopsis	Similar to At3g27410: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.14
%ile	22.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.85	1619910_at	CF405078	-	-	2e-1	At3g27410	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.95	1610936_at	CB972355	hypothetical protein LOC100259946	-	2e-1	At3g14870	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1610370_s_at	CB975555	hypothetical protein LOC100243953	-	1e+0	At5g22430	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1609022_at	CF371738	hypothetical protein LOC100250008	-	1e+0	At4g13690	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.96	1617350_at	CB975555	hypothetical protein LOC100243953	-	1e+0	At5g22430	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.93	1620155_at	CB969445	hypothetical protein LOC100242363	-	1e+0	At3g56970	BHLH038	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	98.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.2	98.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.4	97.3	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.8075.3.A1_at, orthologous to the query gene, 1619910_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	PtpAffx.8075.3.A1_at	At3g27410	-	-	1e-1	At2g41070	EEL (ENHANCED EM LEVEL)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.79954.1.S1_at	At3g27410	hypothetical protein	-	9e-20	At1g61780	postsynaptic protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.7510.1.S1_at	At3g27410	hypothetical protein	-	3e+0	At5g18790	ribosomal protein L33 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.206152.1.S1_at	At3g27410	hypothetical protein	-	8e-37	At3g15880	protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.36554.1.A1_at	At3g27410	hypothetical protein	-	2e-68	At3g52580	40S ribosomal protein S14 (RPS14C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.159539.1.S1_at	At3g27410	hypothetical protein	-	3e-12	At5g53400	nuclear movement family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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