Co-expression analysis

Gene ID	1619910_at
Gene name
Homology with Arabidopsis	Similar to At3g27410: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.14
%ile	22.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.85	1619910_at	CF405078	-	-	2e-1	At3g27410	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.95	1610936_at	CB972355	hypothetical protein LOC100259946	-	2e-1	At3g14870	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1610370_s_at	CB975555	hypothetical protein LOC100243953	-	1e+0	At5g22430	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1609022_at	CF371738	hypothetical protein LOC100250008	-	1e+0	At4g13690	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.96	1617350_at	CB975555	hypothetical protein LOC100243953	-	1e+0	At5g22430	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.93	1620155_at	CB969445	hypothetical protein LOC100242363	-	1e+0	At3g56970	BHLH038	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	98.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.2	98.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.4	97.3	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51

Inter-species module comparison

A co-expression module including the barley gene, HU09E15u_at, orthologous to the query gene, 1619910_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	HU09E15u_at	At3g27410	-	-	1e+1	At4g37090	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	HU09E15u_x_at	At3g27410	-	-	1e+1	At4g37090	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig19683_at	At3g27410	-	-	1e+0	At3g24820	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig19665_at	At3g27410	-	-	3e-1	At3g16820	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig26505_at	At3g27410	-	-	1e+0	At5g54300	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	rbags23g17_s_at	At3g27410	-	-	3e-1	At3g46410	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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