CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1619910_at

Gene name
Homology with Arabidopsis Similar to At3g27410: unknown protein (HF=2e-1)

Module size 6 genes

NF 0.14

%ile 22.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.85 1619910_at CF405078 - - 2e-1 At3g27410 unknown protein O.I. H.G. S.X.
0.60 81.9 0.95 1610936_at CB972355 hypothetical protein LOC100259946 - 2e-1 At3g14870 unknown protein O.I. H.G. S.X.
0.44 64.1 0.97 1610370_s_at CB975555 hypothetical protein LOC100243953 - 1e+0 At5g22430 unknown protein O.I. H.G. S.X.
0.33 45.7 0.96 1609022_at CF371738 hypothetical protein LOC100250008 - 1e+0 At4g13690 unknown protein O.I. H.G. S.X.
0.31 41.3 0.96 1617350_at CB975555 hypothetical protein LOC100243953 - 1e+0 At5g22430 unknown protein O.I. H.G. S.X.
0.03 4.2 0.93 1620155_at CB969445 hypothetical protein LOC100242363 - 1e+0 At3g56970 BHLH038 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.2 98.2 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.2 98.2 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.4 97.3 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.9 93.8 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.8 93.4 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g27410, orthologous to the query gene, 1619910_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.53 68.6 At3g27410 822362 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. H.G. S.X.
0.89 94.6 At3g19690 821506 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. H.G. S.X.
0.89 94.6 At5g20340 832156 BG5 (beta-1,3-glucanase 5) Encodes a putative beta 1,3-glucanase. O.I. H.G. S.X.
0.89 94.6 At5g42260 834231 BGLU12 (BETA GLUCOSIDASE 12) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. H.G. S.X.
0.86 93.1 At5g35380 833499 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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