Co-expression analysis

Gene ID	1619874_at
Gene name
Homology with Arabidopsis	Similar to At2g16580: auxin-responsive protein, putative (HF=7e-3)
Module size	10 genes
NF	0.35
%ile	51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.9	0.83	1619874_at	CB004955	-	-	7e-3	At2g16580	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.95	1612296_at	CD802074	hypothetical protein LOC100241683	-	4e-12	At3g55920	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.96	1615282_s_at	CB345099	hypothetical protein LOC100261311	-	2e-21	At3g16570	RALFL23 (ralf-like 23)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.96	1616932_at	BQ797202	hypothetical protein LOC100254373	-	1e-8	At1g71110	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.96	1615628_at	CB345697	hypothetical protein LOC100244782	-	5e-1	At4g10080	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.91	1615610_at	CF215193	-	-	1e-1	At5g57270	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.95	1620218_at	CF405310	hypothetical protein LOC100262456	-	1e+0	At1g64490	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1619593_at	CF215832	hypothetical protein LOC100255022	-	2e-11	At3g17210	HS1 (HEAT STABLE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.95	1606675_at	CB006583	hypothetical protein LOC100241072	-	1e-97	At3g02780	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.96	1615100_at	CD800731	-	-	6e-9	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.2	89.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.0	88.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
1.9	87.2	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
1.8	86.0	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.8	86.0	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.8	86.0	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.7	84.7	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
1.7	84.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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