Co-expression analysis

Gene ID	1619857_at
Gene name
Homology with Arabidopsis	Similar to At2g23950: leucine-rich repeat family protein / protein kinase family protein (HF=7e-8)
Module size	6 genes
NF	0.06
%ile	11.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.73	1619857_at	CF568830	-	-	7e-8	At2g23950	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.97	1615699_s_at	CD800812	hypothetical protein LOC100262542	-	1e-108	At3g58610	ketol-acid reductoisomerase	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.96	1611024_at	CB006106	-	-	6e+0	At5g03310	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.95	1609597_at	CF519180	hypothetical protein LOC100264477	-	3e-1	At3g43900	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.96	1620185_a_at	CB971924	hypothetical protein LOC100263951	-	2e+0	At5g62950	catalytic/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.95	1618680_at	CF513228	hypothetical protein LOC100245394	-	4e-3	At3g02750	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	98.5	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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